EDGE CUTOFFS

Only show the links with significance better than:

Show over/under-populations greater than TR of the total:

Show small overpopulations greater than PR of an edge population:

Show small underpopulations greater than NR of the total population:

Show correlations with blank positions


DISPLAY OPTIONS

Color residues by:

Order residues by:

Group residues by:

Legend intensity:


 

HELP

 

Navigation

Left mouse button: Control the rotation of the object around the origin

Right mouse button: Control translation of the object in (X,Y) plane

Left mouse button + alt: Control zoom in/out

Algorithm

Algorithm at a Glance

Edge Color Explanations

Suggestions and Usage Tips

Ray,W. (2004) Nucleic Acids Res. 32. W59-63

Ray,W. (2005) Nucleic Acids Res. 33. W315-W319

Ozer, H.G. and Ray,W. (2006) Nucleic Acids Res. 34. W133-W136


Make sure to have Java 3D 1.3.1 API installed.


 
Copyright 2006  
   
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INPUT SEQUENCE ALIGNMENT (Click on a sequence to trace it visually)

1....6....11...
KCGFFKRNRLDQPSL
KCGFFNRNRPTDHSQ
KVGFFKRIRPTDPTL
RCGFFKRNRPPTEHA
KFGFFKRVRPPQEEQ
RMGFFKRVRPPQEEQ
KLGFFKRVRPPQEET
KVGFFKRNRPPLEED
KCGFFDRARPPQDDM
KCGFFRRDKKDQFDA
KCGFFKRSKKDHYDA
KLGFFKRHYKEMLED
KVGFFKRQYKEMMEE
KLGFFKRQYKDMMSE
KAGFFKRQYKSILQE
KLGFFKRKYQKLQKT
KLGFFKRQYKKMGQN
KLGFFKRKYEKMAKN
KVGFFKRNLKEKMEA
KIGFFKRPLKKKMEK
KMGFFRRRYKEIIEA
KLGFFKRAKHPEATV
KLGFFKRSYQYGTAM
KLGFFKRSLPYGTAM
KCGFFERKKPGEEKE
KCGFFKRKYQQLNLE
KVGFFRRKYQPIGTE

GROUPING SCHEME